2013 Summer Training Course | Pediatric Neuroimaging Research Consortium

2013 Summer Training Course


Basic Level: 2013 PNRC Neuroimaging Training Course               

Date

Topic

Material

Time

Location

6/24

Basic MRI Physics & Functional MRI

Instructor: Dr. Gregory Lee

Handouts 1 2

Watch 1 2

1-2 p.m.

S10.130

6/25

MR Perfusion Imaging with endogenous and exogenous contrast

Instructor:  Dr. Gregory Lee

Handouts 1 2

Watch 1 2

1-2 p.m.

S10.110

6/26

FMRI Experimental Design

Instructor: Dr. Jennifer Vannest

Handouts 1 2

Watch 1 2 3

1-2 p.m.

S6.125

6/27

FMRI data: Image File formats, conversion, reading, visualization tools

Instructor:  Akhila Rajagopal, MS

Handouts 1

Watch 1 2

1-2 p.m.

S5.125

6/28

FMRI data: Single Subject Analysis I (pre-processing including motion correction, segmentation, normalization)

Software: FSL

Instructor: Thomas Maloney, MS

 

Handouts 1

Watch 1 2

1-2 p.m.

S10.130

7/1

FMRI data: Single Subject Analysis II (General Linear Model)

Software: FSL

Instructor: Dr. Gregory Lee

 

Handouts 1

Watch 1 2

1-2 p.m.

S3.125

7/2

FMRI data: Group level analysis (Fixed, Mixed, and Random effects, thresholding)

Software: FSL/ANTS

Instructor: Drs. Gregory LeeMark DiFrancesco

 

Handouts 1

Watch 1

1-2 p.m.

S5.125

7/3

FMRI data: ROI analysis

Software: FSL

Instructor: Thomas Maloney, MS

Handouts 1

Watch 1

1-2 p.m.

S6.125

7/8

Basic Diffusion Tensor Imaging (DTI) Theory

Instructor: Dr. Weihong Yuan

Handouts 1

Watch 1 2 3

1-2 p.m.

S5.125

7/9

DTI data analysis

Software: (DTIStudio) / (TBSS)

Instructor:   Dr. Weihong Yuan

Handouts 1 2

Watch 1 2

1-2 p.m.

S5.125

 

Advanced Level:  2013 PNRC Neuroimaging Training Course               

Date

Topic

Material

Time

Location

8/5

FMRI data: Independent Component Analysis (GIFT) & Connectivity Analysis I (FNC)

Software: Matlab & GIFT & FNC

Instructor:  Yingying Wang, MS

Handouts 1

cocktail 1

single ICA 1

group ICA 1

GIFT

FNC

Watch 1 2 3 4

1-3 p.m.

S3.125

8/12

FMRI data: Multivariate method (Support Vector Machine)

Software: Matlab & SVM

Instructor: Lirong Tan, MS

Handouts 1

libsvm 1

install notes 1

example 1

Watch 1 2 3

1-3 p.m.

S3.125

8/14

DTI data analysis (Connectivity)

Software: FSL

Instructor:  Dr. Weihong YuanThomas Maloney, MS

Handouts 1 2

TrackVis 1

Diffusion Tool 1

Example Data 1

Watch 1 2 3

1-3 p.m.

S5.125

8/19

FMRI data: Connectivity Analysis II (Correlation Analysis)

Software: Matlab & CONN

Instructor: Yingying Wang, MS & Dr. Mark DiFrancesco

Handouts 1

conn.zip

spm8.zip

mricron.zip

proc_data.zip

refs.zip

Watch 1 2 3

1-3 p.m.

S6.125

8/21

Voxel Based Morphometry Analysis

Software: Matlab & SPM8

Instructor: Dr. Mekibib Altaye

Handouts 1

vbm8.zip

VBM8 manual

sample_data.zip

vbm8_outputs.zip

Watch 1 2 3 4

1-3 p.m.

S7.125